VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
gE
are
1
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi1908
aauauacgaaucgugucugua
Herpes Simplex Virus [HSV]
gE
HaCaT
Plaque Count
75
15367593
Blast
SL
refseqs
     
siRNA sequence "
aauauacgaaucgugucugua
" alignment with "
Herpes Simplex Virus [HSV]
" virus reference Genome sequences
Sorry unable to load image
Browse all the records for "
Herpes Simplex Virus [HSV]
" virus
Browse "
virsi1908
" record
Length:
21
GC Content:
33 %
Starting position:
155351
Strain of Virus:
HSV-1 Strain 17
GenBank Acc:
FJ593289
Transfection Reagent:
Lipofectin
Incubation Time (Hours):
72
Offtargets for "
aauauacgaaucgugucugua
" siRNA in Human Genome sequences
See
FJ593289
at Genbank
Pubmed:
15367593
Article:
Short interfering RNA-mediated inhibition of herpes simplex virus type 1 gene expression and function during infection of human keratinocytes.
Authors:
Bhuyan PK, Karikò K, Capodici J, Lubinski J, Hook LM, Friedman HM, Weissman D.
Journal:
J Virol. 2004 Oct;78(19):10276-81.
Entrez:
15367593
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm